Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs56170893 | chr3:139265722 | T/C | 3.37E-5 | 489 | 15.9 | 17.1 | 13.08 | KM Plot |
| THCA | rs56173590 | chr4:88216147 | C/T | 0.000266 | 488 | 16.2 | 15.33 | 11.33 | KM Plot |
| THCA | rs56182776 | chr14:36076048 | C/T | 5.84E-6 | 481 | 15.93 | 16.07 | 8.33 | KM Plot |
| THCA | rs56186702 | chr16:69853843 | A/G | 0.000166 | 486 | 16.27 | 10.62 | 18.18 | KM Plot |
| THCA | rs56198874 | chr10:81686488 | C/T | 0.000112 | 485 | 16.2 | 16.57 | 9.77 | KM Plot |
| THCA | rs56202706 | chr5:175763030 | G/T | 0.000237 | 479 | 15.5 | 16.3 | 20.77 | KM Plot |
| THCA | rs56210757 | chr3:139269160 | A/G | 5.05E-6 | 486 | 15.9 | 16.87 | 14.53 | KM Plot |
| THCA | rs56220351 | chr6:26206884 | A/G | 2.31E-8 | 486 | 15.27 | 17.12 | 4.75 | KM Plot |
| THCA | rs56227445 | chr10:81991401 | A/G | 8.26E-5 | 482 | 16.2 | 15.83 | 9.77 | KM Plot |
| THCA | rs56235549 | chr10:81834948 | G/A | 0.000269 | 488 | 16.08 | 15.9 | 11.73 | KM Plot |
| THCA | rs56236944 | chr12:9469846 | C/T | 0.000113 | 480 | 15.67 | 16.45 | 16.82 | KM Plot |
| THCA | rs56241440 | chr11:133840830 | A/C | 7.72E-5 | 489 | 16.02 | 15.9 | 8.73 | KM Plot |
| THCA | rs56246308 | chr3:127634333 | C/T | 0 | 489 | 16.27 | 14.97 | 6.03 | KM Plot |
| THCA | rs56257750 | chr3:111270020 | A/G | 6.53E-5 | 488 | 16.3 | 14.93 | 16.55 | KM Plot |
| THCA | rs56260937 | chr1:156884584 | C/T | 1.11E-6 | 482 | 16.6 | 15.05 | 11.98 | KM Plot |